netmap.downstream.final_downstream.curate_network

netmap.downstream.final_downstream.curate_network(grn_adata_, organism='human', tfs=None)

Load CollecTRI data for a specific organism, format it, and curate the network data based on the provided gene regulatory network (GRN) data.

Parameters:

grn_adata_AnnData

Annotated data object containing the gene regulatory network (GRN) data.

organismstr, optional (default=”human”)

The organism to retrieve data for from CollecTRI.

tfslist of str or None, optional (default=None)

A list of transcription factors (source genes) to retain. If None, all TFs are used.

Returns:

net_df_curatedpandas.DataFrame

The curated network DataFrame, containing the merged GRN data and CollecTRI interaction data.