netmap.utils.data_utils

I/O utilities for AnnData objects and Parquet-backed GRN edge data.

retrieve_top_edges() and retrieve_edges_by_index() load specific attribution columns from the Parquet shards written by inferrence() into grn_adata.X.

Functions

attribution_to_anndata	Transform an attribution data frame into an AnnData object.
create_output_directory	Create the output directory defined in result_params.
merge_all_to_obs	Copies all variables from source_adata into target_adata.obs for convenient Scanpy plotting.
remove_Ucell_columns	Removes all UCell columns from grn_adata.obs.
remove_regulon_columns	Removes all regulon columns from grn_adata.obs.
retrieve_edges_by_index	Load specific edges by integer index from Parquet shards.
retrieve_top_edges	Load the top-percentage edges by attribution sum from Parquet shards.
save_anndata	Save an AnnData object to disk.