netmap.downstream.clustering

Functions

downstream_recipe	Runs sc.pca, sc.neighbors, sc.leiden, and sc.umap.
process	Wrapper function that passes all extra keyword arguments to downstream_recipe.
spectral_clustering	Run sklearn spectral clustering on the neighbour matrix in the anndata object.
unify_group_labelling	Adjust group labelling such that grn_adata has the same group label than the corresponding column in adata based on the grn column.